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| Program | MTA | Name | Title | Journal | Preceptors | Published | PubMedLink |
|---|---|---|---|---|---|---|---|
| GGS | MDPhD | Huynh, Jimmy | Chromatin landscape defined by repressive histone methylation during oligodendrocyte differentiation | Journal of Neuroscience | Patrizia Casaccia | January 7, 2015 | Link |
| GGS | MDPhD | Badgeley, Marcus | Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. | Briefings in Bioinformatics | Joel Dudley | February 14, 2016 | Link |
| GGS | PhD | Wang, Zichen | Signaling Networks among Stem Cell Precursors, Transit-Amplifying Progenitors, and their Niche in Developing Hair Follicles | Cell Reports | Avi Ma’ayan | March 29, 2016 | Link |
| GGS | PhD | Wang, Zichen | Drug-induced adverse events prediction with the LINCS L1000 data | Bioinformatics | Avi Ma’ayan | April 1, 2016 | Link |
| GGS | PhD | Shen, Nan | The microbiome of uncontacted Amerindians. | Sci Adv | Dr. Jose Clemente | April 3, 2015 | Link |
| GGS | MDPhD | Huynh, Jimmy | Combinatorial actions of Tgfβ and Activin ligands promote oligodendrocyte development and CNS myelination | Development | Patrizia Casaccia | June 1, 2014 | Link |
| GGS | MDPhD | Zhang, David | A hepatic stellate cell gene expression signature associated with outcomes in hepatitis C cirrhosis and hepatocellular carcinoma after curative resection | Gut | Scott L. Friedman | June 4, 2015 | Link |
| GGS | PhD | Wang, Zichen | Dynamics of the discovery process of protein-protein interactions from low content studies | BMC Systems Biology | Avi Ma’ayan PhD | June 6, 2015 | Link |
| GGS | PhD | Beaulaurier, John | Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes | Nature Communications | Gang Fang | June 15, 2015 | Link |
| GGS | PhD | Shen, Nan | Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes. | Nat Commun | Dr. Fang Gang | June 15, 2015 | Link |
| GGS | PhD | Beaulaurier, John | Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti. | mBio | Ali Bashir | July 2, 2013 | Link |
| GGS | PhD | Wang, Zichen | An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. | F1000Research | Avi Ma’ayan | July 5, 2016 | Link |
| GGS | MDPhD | Josowitz, Rebecca | Identification and purification of human induced pluripotent stem cell-derived atrial-like cardiomyocytes based on sarcolipin expression. | PLOS One | Bruce D. Gelb | July 10, 2014 | Link |
| GGS | PhD | Shen, Nan | Engineering the Microbiome: a Novel Approach to Immunotherapy for Allergic and Immune Diseases. | Curr Allergy Asthma Rep | Dr. Jose Clemente | July 15, 2015 | Link |
| GGS | MDPhD | Huynh, Jimmy | Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases | Molecular Systems Biology | Patrizia Casaccia | July 30, 2014 | Link |
| GGS | MDPhD | Huynh, Jimmy | Cerebrospinal fluid ceramides from patients with multiple sclerosis impair neuronal bioenergetics | Brain | Patrizia Casaccia | August 1, 2014 | Link |
| GGS | PhD | Wang, Zichen | Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction | Computational Biology and Chemistry | Avi Ma’ayan PhD | August 18, 2015 | Link |
| GGS | PhD | Wang, Zichen | Lean Big Data integration in systems biology and systems pharmacology | Trends in Pharmacological Sciences | Avi Ma’ayan PhD | September 1, 2014 | Link |
| GGS | PhD | Wang, Zichen | An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin | Developmental Cell | Avi Ma’ayan PhD | September 14, 2015 | Link |
| GGS | PhD | Wang, Zichen | Lean Big Data integration in systems biology and systems pharmacology | Trends in pharmacological sciences | Avi Ma’ayan | September 30, 2014 | Link |
| GGS | MDPhD | Huynh, Jimmy | Epigenome-wide differences in pathology-free regions of multiple sclerosis-affected brains | Nature Neuroscience | Patrizia Casaccia, Andrew J. Sharp | January 1, 2014 | Link |
| GGS | PhD | Fu, Shih-Chen | Synaptic, transcriptional and chromatin genes disrupted in autism | Nature | Joseph Buxbaum | October 29, 2014 | Link |
| GGS | PhD | Wang, Zichen | Histone H3.3 and its proteolytically processed form drive a cellular senescence programme | Nature communications | Avi Ma’ayan | November 4, 2014 | Link |
| GGS | PhD | Jayaprakash, Anitha | Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing. | Nucleic Acids Research | Ravi Sachidanandam / Andrew Chess | November 11, 2011 | Link |
| GGS | PhD | Wang, Zichen | Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets | Bioinformatics | Avi Ma’ayan PhD | November 15, 2014 | Link |
| GGS | MDPhD | Mullokandov, Gavriel | Hepatitis C virus genetics affects miR-122 requirements and response to miR-122 inhibitors | Nature Communications | Brian D. Brown | November 18, 2014 | Link |
| GGS | PhD | Gopalakrishnan, Kalpana | Effect of maternal exposure to endocrine disrupting chemicals on reproduction and mammary gland development in female sprague-dawley rats | Reproductive Toxicology | Jia Chen | December 29, 2014 | Link |
| GGS | PhD | Huynh, Jimmy | Epigenetic mechanisms in multiple sclerosis: implications for pathogenesis and treatment. | Lancet Neurology | Patrizia Casaccia | February 12, 2013 | Link |
| GGS | PhD | Jayaprakash, Anitha | Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells. | Current Biology | Ravi Sachidanandam / Andrew Chess | February 25, 2011 | Link |
| GGS | PhD | Barbosa, Mafalda | Autosomal dominant spastic paraplegias: a review of 89 families resulting from a Portuguese survey | JAMA Neurology | Andrew Sharp | April 18, 2024 | Link |
| GGS | PhD | Barbosa, Mafalda | Living with inborn errors of cholesterol biosynthesis: lessons from adult patients | Clinical Genetics | Andrew Sharp | April 18, 2024 | Link |
| GGS | PhD | Barbosa, Mafalda | Variant Rett syndrome in a girl with a pericentric X-chromosome inversion leading to epigenetic changes and overexpression of the MECP2 gene | International Journal of Developmental Neuroscience | Andrew Sharp | April 18, 2024 | Link |
| GGS | PhD | Barbosa, Mafalda | Recurrent copy number variations as risk factors for neurodevelopmental disorders: critical overview and analysis of clinical implications | Journal of Medical Genetics | Andrew Sharp | April 18, 2024 | Link |
| GGS | PhD | Barbosa, Mafalda | Identification of novel genetic causes of Rett syndrome-like phenotypes | Journal of Medical Genetics | Andrew Sharp | April 18, 2024 | Link |
| GGS | PhD | hasson, dan | ATRX-mediated chromatin association of histone variant macroH2A1 regulates ?-globin expression. | Genes & Development | Peter Warburton | March 1, 2012 | Link |
| GGS | PhD | hasson, dan | MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency. | Nature Communications | Peter warburton | March 5, 2013 | Link |
| GGS | PhD | hasson, dan | The octamer is the major form of CENP-A nucleosomes at human centromeres. | Nature Structural & Molecular Biology | Peter Warburton | June 1, 2013 | Link |
| GGS | PhD | Jayaprakash, Anitha | High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. | Nature Methods | Ravi Sachidanandam / Andrew Chess | July 1, 2012 | Link |
| GGS | MDPhD | Mullokandov, Gavriel | High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. | Nature Methods | Brian Brown | July 1, 2012 | Link |
| GGS | PhD | Jayaprakash, Anitha | MiST: a new approach to variant detection in deep sequencing datasets. | Nucleic Acids Research | Ravi Sachidanandam / Andrew Chess | July 1, 2013 | Link |
| GGS | PhD | Dincer, Aslihan | Conserved Chromosome 2q31 Conformations Are Associated with Transcriptional Regulation of GAD1 GABA Synthesis Enzyme and Altered in Prefrontal Cortex of Subjects with Schizophrenia. | The Journal of Neuroscience | Schahram Akbarian | July 17, 2013 | Link |
| GGS | PhD | Chaoprang Herrera, Phapichaya | Muscle invasive bladder cancer: examining survivor burden and unmet needs | The Journal of Urology | The Journal of Urology | July 30, 2013 | Link |