Research Papers

Our researchers and clinicians at the Icahn Institute and Department of Genetics and Genomic Sciences have published research in a number of top journals throughout the world.

Featured Publications

Below are some of the more recent publications from our researchers and faculty.

Gang Fang, John Beaulaurier, Shijia Zhu, et al. (2015) Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes. Nature Communications 6 Read the full study

Sanderson S, Linderman M, Suckiel S, Diaz G, Zinberg R, Ferryman K, Wasserstein M, Kasarskis A, Schadt E (2015) Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project. EJHG 10.1038 Read the full study

Tu Z, Zhang B, Zhu J, Huang T, et al. contributed to the network analysis in the project The Genotype-Tissue Expression (GTEx) pilot analysis: Multi-tissue gene regulation in humans. Science Read the full study

Jose Clemente, et al. (2015) The Microbiome of Uncontacted Amerindians. Science Advances Read the full study

Harm Van Bakel, Ivan Marazzi, Christopher Basler, Ana Fernandez-Sesma, et al. (2015) Senataxin suppresses the antiviral transcriptional response and controls vital biogenesis. Nature Immunology Read the full study

Brown B, Evans M, Israelow B, Mullokandov G, Agudo J, Sourisseau M, Bashir A, Maldonado A, Dar A, et al. (2014) Hepatitis C virus genetics affects miR-122 requirements and response to miR-122 inhibitors. Nat Commun 5. Read the full study

Zhu J, Huynh JL, Yoo S, Zhang B, Schadt E, Casaccia P, et al. (2014) Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases. Mol Syst Biol 10:743. Read the full study

Brahmachary M, Guilmatre A, Quilez J, Hasson D, Borel C, Warburton P, Sharp AJ, et al. (2014) Digital genotyping of macrosatellites and multicopy genes reveals novel biological functions associated with copy number variation of large tandem repeats. PloS Genet 10 : e1004418 Read the full study

Houten S, Denis S, te Brinke H, Jongejan A, van Kampen AHC, et al. (2014) Mitochondrial NADP(H) deficiency due to a mutation in NADK2 causes dienoyl-CoA reductase deficiency with hyperlysinemia. Hum Mol Genet 23(11) Read the full study

Pinto D, Delaby E, Merico D, Barbosa M, Merikangas A, et al. (2014) Convergence of Genes and Cellular Pathways Dysregulated in Autism Spectrum Disorders. Cell Press. Read the full study

Briese T, Mishra N, Jain K, Zalmout I, Jabado O, et al. (2014) Middle East Respiratory Syndrome Coronavirus Quasispecies That Include Homologues of Human Isolates Revealed through Whole-Genome Analysis and Virus Cultured from Dromedary Camels in Saudi Arabia. mBio 5(3) Read the full study

Auer P, Teumer A, Schick U, O’Shaughnessy A, Lo K, et al. (2014) Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits. Nat Genet. (2014) Read the full study

Dhandapany P, Razzaque M, Muthusami U, Kunnoth S, Edwards J, et al. (2014) RAF1 mutations in childhood-onset dilated cardiomyopathy. Nat. Genet. Read the full study

Sivendran S, Chang R, Pham L, Phelps R, Harcharik S et al. (2014) Dissection of Immune Gene Networks in Primary Melanoma Tumors Critical for Anti-Tumor Surveillance of Patients with Stage II-III Resectable Disease. J Invest Dermatol. Read the full study

Björkegren JLM, Hägg S, Talukdar HA, Foroughi Asl H, Jain RK, et al. (2014) Plasma Cholesterol-Induced Lesion Networks Activated before Regression of Early, Mature, and Advanced Atherosclerosis. PLoS Genet 10(2) Read the full study

Fromer M, Pocklington A, Kavanagh D, Williams H, Dwyer S et al. (2014) De novo mutations in schizophrenia implicate synaptic networks. Nature. Read the full study

Kidd B, Peters L, Schadt E, Dudley J (2014) Unifying immunology with informatics and multiscale biology. Nat Immunol 15(2):118-27 Read the full study

Purcell S, Moran J, Fromer M, Ruderfer D, Solovieff N et al. (2014) A polygenic burden of rare disruptive mutations in schizophrenia. Nature. Read the full study

Parikh A, Lee C, Perinne J, Marchini S, Baccarini A et al. (2014) microRNA-181a has a critical role in ovarian cancer progression through the regulation of the epithelial-mesenchymal transition. Nat Commun 5. Read the full study

Martignetti J, Camacho-Vanegas O, Priedigkeit N, Camacho C, Pereira E, et al. (2014) Personalized Ovarian Cancer Disease Surveillance and Detection of Candidate Therapeutic Drug Target in Circulating Tumor DNA. Neoplasia 16(1). Read the full study

Agudo J, Ruzo A, Tung N, Salmon H, Leboeuf M, et al. (2014) The miR-126-VEGFR2 axis controls the innate response to pathogen-associated nucleic acids. Nat Immunol 15(1):54-62 Read the full study

Huynh J, Garg P, Thin T, Yoo S, Dutta R et al. (2014) Epigenome-wide differences in pathology-free regions of multiple sclerosis?affected brains. Nat Neurosci 17(1):121-130 Read the full study