Gaurav Pandey, PhD
img_Gaurav Pandey
ASSOCIATE PROFESSOR | Genetics and Genomic Sciences
ASSOCIATE PROFESSOR | Artificial Intelligence and Human Health
Research Topics
Bioinformatics, Biostatistics, Computational Biology, Drug Design and Discovery, Epigenetics, Gene Regulation, Mathematical Modeling of Biomedical Systems, Mathematical and Computational Biology, Microarray, Oncogenes, Protein Structure/Function
Multi-Disciplinary Training Area
Artificial Intelligence and Emerging Technologies in Medicine [AIET], Genetics and Genomic Sciences [GGS]


Computational genomics and large-scale data analysis/mining
Our lab develops and applies computational methods for building predictive and network models of complex biological processes and diseases. These data-driven methods have become critical in the new era biology, which is witnessing an explosion of the amount and types of data like never before. Using such approaches, we have gained successful insights into immunological processes, large-scale interactions between genes and proteins and survival of breast cancer patients. We also have a continuing interest in the computational prediction of protein function and the development of novel data mining and machine learning methods. For more details of our work, check out our lab website.

We have built successful collaborations with immunologists and cancer and cardiovascular specialists, with many more being planned. We are a small lab right now, because of which the PI can pay more attention to lab members' projects and problems. We are a completely computational or bioinformatics lab right now, so some computing experience will be appreciated, but not necessary.  The main requirement is a strong motivation to learn and excel. If you are interested in joining us (we hope you are!), send an email to gaurav.pandey@mssm.edu to set up a time for discussion. We are located within the Genomics Institute's suite on the 3rd floor of the Icahn Medical Institute.

PhD, University of Minnesota

Post-doctoral scholar, University of California, Berkeley

2015

IBM Faculty Award

IBM

2011

Certificate of recognition for excellent contributions to data mining research

ACM SIGKDD (largest society of professional data mining researchers)

2009

Doctoral dissertation fellowship

University of Minnesota Graduate School

2009

Structure extraction from unstructured documents, US Patent 7,562,088

2004

Finalist for Ph.D. fellowship (one of about 30 candidates across all Comp. Sc. departments)

IBM

2004

Undergraduate scholarship

ACM SIGMOD (largest society of professional database researchers and practitioners)

Publications

Selected Publications

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods. Shantanu Jain, Constantina Bakolitsa, Steven E. Brenner, Predrag Radivojac, John Moult, Susanna Repo, Roger A. Hoskins, Gaia Andreoletti, Daniel Barsky, Ajithavalli Chellapan, Hoyin Chu, Navya Dabbiru, Naveen K. Kollipara, Melissa Ly, Andrew J. Neumann, Lipika R. Pal, Eric Odell, Gaurav Pandey, Robin C. Peters-Petrulewicz, Rajgopal Srinivasan, Stephen F. Yee, Sri Jyothsna Yeleswarapu, Maya Zuhl, Ogun Adebali, Ayoti Patra, Michael A. Beer, Raghavendra Hosur, Jian Peng, Brady M. Bernard, Michael Berry, Shengcheng Dong, Alan P. Boyle, Aashish Adhikari, Jingqi Chen, Zhiqiang Hu, Robert Wang, Yaqiong Wang, Maximilian Miller, Yanran Wang, Yana Bromberg, Paola Turina, Emidio Capriotti, James J. Han, Kivilcim Ozturk, Hannah Carter, Giulia Babbi, Samuele Bovo, Vikas Pejaver, Daniel M. Jordan, Jason R. Bobe. Genome Biology

Machine learning-driven identification of air toxic combinations associated with asthma symptoms among elementary school children in Spokane, Washington, USA. Solmaz Amiri, Yan Chak Li, Dedra Buchwald, Gaurav Pandey. Science of the Total Environment

Relationship Between Cognitive Impairment and Depression Among Middle Aged and Older Adults in Primary Care. Alex D. Federman, Jacqueline Becker, Fernando Carnavali, Monica Rivera Mindt, Dayeon Cho, Gaurav Pandey, Lili Chan, Laura Curtis, Michael S. Wolf, Juan P. Wisnivesky. Gerontology and Geriatric Medicine

View All Publications

Physicians and scientists on the faculty of the Icahn School of Medicine at Mount Sinai often interact with pharmaceutical, device, biotechnology companies, and other outside entities to improve patient care, develop new therapies and achieve scientific breakthroughs. In order to promote an ethical and transparent environment for conducting research, providing clinical care and teaching, Mount Sinai requires that salaried faculty inform the School of their outside financial relationships.

Dr. Pandey has not yet completed reporting of Industry relationships.

Mount Sinai's faculty policies relating to faculty collaboration with industry are posted on our website. Patients may wish to ask their physician about the activities they perform for companies.