Publications

Hematopoietic Stem Cells Count and Remember Self-Renewal Divisions
Bernitz JM, Kim HS, MacArthur B, Sieburg H, Moore K.
Cell. 2016 Nov 17; 167 (5); 1296-1309: e10.

Making a Hematopoietic Stem Cell.
Daniel MG, Pereira CF, Lemischka IR, Moore KA.
Trends Cell Biol. 2015 Oct 30. pii: S0962-8924(15)00189-0.

Editorial overview: Cell reprogramming, regeneration and repair: Reprogramming: the eternal circle.
Clark AT, Zwaka TP.
Curr Opin Genet Dev. 2015 Oct 14. pii: S0959-437X(15)00099-4.

A Systems Approach Identifies Essential FOXO3 Functions at Key Steps of Terminal Erythropoiesis.
Liang R, Campreciós G, Kou Y, McGrath K, Nowak R, Catherman S, Bigarella CL, Rimmelé P, Zhang X, Gnanapragasam MN, Bieker JJ, Papatsenko D, Ma'ayan A, Bresnick E, Fowler V, Palis J, Ghaffari S.
PLoS Genet. 2015 Oct 9; 11(10):e1005526.

An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin.
Sennett R, Wang Z, Rezza A, Grisanti L, Roitershtein N, Sicchio C, Mok KW, Heitman NJ, Clavel C, Ma'ayan A, Rendl M.
Dev Cell. 2015 Sep 14; 34(5):577-91.

Mitochondrial metabolism in hematopoietic stem cells requires functional FOXO3.
Rimmelé P, Liang R, Bigarella CL, Kocabas F, Xie J, Serasinghe MN, Chipuk J, Sadek H, Zhang CC, Ghaffari S.
EMBO Rep. 2015 Sep; 16(9):1164-76.

Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal.
Papatsenko D, Darr H, Kulakovskiy IV, Waghray A, Makeev VJ, MacArthur BD, Lemischka IR.
Stem Cell Reports. 2015 Aug 11; 5(2):207-20.

Distribution Analyzer, a methodology for identifying and clustering outlier conditions from single-cell distributions, and its application to a Nanog reporter RNAi screen.
Gingold JA, Coakley ES, Su J, Lee DF, Lau Z, Zhou H, Felsenfeld DP, Schaniel C, Lemischka IR.
BMC Bioinformatics. 2015 Jul 22;16:225.

Tbx3 Controls Dppa3 Levels and Exit from Pluripotency toward Mesoderm.
Waghray A, Saiz N, Jayaprakash AD, Freire AG, Papatsenko D, Pereira CF, Lee DF, Brosh R, Chang B, Darr H, Gingold J, Kelley K, Schaniel C, Hadjantonakis AK, Lemischka IR.
Stem Cell Reports. 2015 Jul 14; 5(1):97-110.

Functional analysis of a chromosomal deletion associated with myelodysplastic syndromes using isogenic human induced pluripotent stem cells.
Kotini AG, Chang CJ, Boussaad I, Delrow JJ, Dolezal EK, Nagulapally AB, Perna F, Fishbein GA, Klimek VM, Hawkins RD, Huangfu D, Murry CE, Graubert T, Nimer SD, Papapetrou EP.
Nat Biotechnol. 2015 Jun; 33(6):646-55.

PDGF signaling in the dermis and in dermal condensates is dispensable for hair follicle induction and formation.
Rezza A, Sennett R, Tanguy M, Clavel C, Rendl M.
Exp Dermatol. 2015 Jun; 24(6):468-70.

NetExplore: a web server for modeling small network motifs.
Papatsenko D, Lemischka IR.
Bioinformatics. 2015 Jun 1; 31(11):1860-2.

Orchestrating liver development.
Gordillo M, Evans T, Gouon-Evans V.
Development. 2015 Jun 15; 142(12):2094-108.

Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity in Pluripotency and Reprogramming.
Ding J, Huang X, Shao N, Zhou H, Lee DF, Faiola F, Fidalgo M, Guallar D, Saunders A, Shliaha PV, Wang H, Waghray A, Papatsenko D, Sánchez-Priego C, Li D, Yuan Y, Lemischka IR, Shen L, Kelley K, Deng H, Shen X, Wang J.
Cell Stem Cell. 2015 Jun 4; 16(6):653-68.

Modeling familial cancer with induced pluripotent stem cells.
Lee DF, Su J, Kim HS, Chang B, Papatsenko D, Zhao R, Yuan Y, Gingold J, Xia W, Darr H, Mirzayans R, Hung MC, Schaniel C, Lemischka IR.
Cell. 2015 Apr 9; 161(2):240-54.

Developmental biology. A scar is born: origins of fibrotic skin tissue.
Sennett R, Rendl M.
Science. 2015 Apr 17; 348(6232):284-5.