Sequencing & Sample Pricing - Genomics | Icahn School of Medicine

The Icahn Institute for Data Science and Genomic Technology and Department of Genetics and Genomic Sciences has their own pricing for sequencing and microarray services.

The costs outlined below are for Icahn School of Medicine at Mount Sinai (ISMMS) investigators and associated laboratories.

We do extend our services to external academic, nonprofit and commercial institutions. Non-profit institutions are encouraged to submit samples for processing. For more details please contact milind.mahajan@mssm.edu.

Sequencing and Sample Pricing

Below is the pricing information for our next-generation sequencing, Pacific Biosciences sequencing, and next-generation sample preparation.

Next-generation Sequencing

Illumina Instrument	Length	Read Type	Price Per Lane
HiSeq 4000 (Throughput = 300M clusters per lane)	100nt	Single Read	$2025
HiSeq 4000 (Throughput = 300M clusters per lane)	100nt	Paired End	$3220
HiSeq 2500	50nt *	Single Read	$1260
HiSeq 2500	50nt *	Paired End	$2000
HiSeq 2500_Rapid Run Mode **	100nt	Single Read	$2200
HiSeq 2500_Rapid Run Mode **	100nt	Paired End	$3625
HiSeq 2500_Rapid Run Mode **	150nt	Paired End	$4200
MiSeq	50nt v.2	Single Read	$1240
MiSeq	150nt v.2	Paired End	$1640
MiSeq	250nt v.2	Paired End	$1920
MiSeq	75nt v.3	Paired End	$1550
MiSeq	300nt v.3	Paired End	$2400

*Must order all 8 lanes on the Illlumina flow cell.
**Must order both 2 lanes on the Illumina Rapid Run flow cell.

Pacific Biosciences Sequencing

Instrument	Movie Time	Price Per SMRT Cell
PacBio RS	45 minutes x 2 movies	Please Contact Robert Sebra
PacBio RS	90 minutes x 1 movie	Please Contact Robert Sebra

Next-generation Sample Preparation Prices

Sequencing Platform	Sample Type	Description	Cost Per Sample
Illumina	Genomic DNA	Standard Library with Index-read multiplexing	$250
Illumina	Genomic DNA	Whole-Exome Capture for one sample	$865
Illumina	Genomic DNA	Whole Exome Capture for two samples	$600
Illumina	Genomic DNA	Whole exome capture for 3 sample pool (e.g. family trio) *	$515
Illumina	Genomic DNA	Custom targeted capture for multiple samples	$350 **
Illumina	Chromatin IPed DNA	Standard library with index-read multiplexing	$250
Illumina	Amplicons	Standard library with index-read multiplexing	$40
Illumina	Total RNA	Poly(A) RNA capture and seq library for multiplex sequencing	$300
Illumina	Total RNA (Eukaryotic or Prokaryotic)	rRNA Depletion with RiboZero and seq library for multiplex sequencing	$430
Illumina	Total RNA	small (micro) RNA seq library for multiplex sequencing	$350
Illumina	PolyA or RiboZero or captured RNA(RIP) >200ng	cDNA library preparation for multiplex sequencing	$300

* Batch of three genomic DNA libraries will be barcoded, captured, and sequenced.
** If pooling more than 10 samples together, an extra charge of $10 per sample will be applied.

Illumina BeadArray Pricing

To calculate project costs, please add chip purchase costs and the associated processing costs. We ask that users purchase their own BeadArrays and submit them along with the samples. The Genomics Core charges only the sample processing costs, which are as follows.

Illumina BeadArray Sample Preparation, Hybridization and Scanning

Array Type	Sample Volume	Price Per Sample
Genotyping	<50	$130
Genotyping	51-96	$65
Genotyping	97-500	$45
Genotyping	501-1000	$35
Genotyping	>1,001	$25
Expression Profiling	-	$140
Methylation Profiling	-	$125

Illumina BeadArray Chip Prices

Please refer to Illumina website for current prices and full product list.